Basic Information
Locus ID:
Ftri8G16409
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 5812165 | 5822231 | + | Ftri8G16409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 49,851.23 Da | 57.21 | 59.20 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 118 | 199 | 1.73008E-29 | - |
| Pfam | PF00098 | Zinc knuckle | 394 | 410 | 2.1E-5 | IPR001878 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 120 | 191 | 2.2E-12 | IPR000504 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 385 | 431 | 1.88E-8 | IPR036875 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 111 | 203 | 1.34E-12 | IPR035979 |
| Gene3D | G3DSA:4.10.60.10 | - | 391 | 446 | 1.9E-12 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 114 | 204 | 4.4E-17 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 119 | 196 | 2.1E-5 | IPR000504 |
| SMART | SM00343 | c2hcfinal6 | 414 | 430 | 0.015 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 394 | 410 | 5.2E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 395 | 410 | 10.229617 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 415 | 430 | 9.685684 | IPR001878 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 118 | 204 | 11.809897 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 258 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.5 | - | 0 |
| RefSeq | XP_021996904.1 | uncharacterized protein LOC110894049 isoform X1 [Helianthus annuus] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251SZ77 | Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0358771 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology