Basic Information
Locus ID:
Ftri8G14509
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 69877976 | 69889132 | + | Ftri8G14509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 129,623.58 Da | 38.97 | 91.38 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 64 | 187 | 1.6675E-26 | IPR002083 |
| Pfam | PF00917 | MATH domain | 68 | 188 | 1.4E-10 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 608 | 860 | 5.5E-68 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 870 | 1079 | 2.4E-48 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 224 | 500 | 4.2E-30 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 59 | 191 | 2.4E-27 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 223 | 530 | 1.94E-66 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 203 | 504 | 4.0E-61 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 786 | 882 | 9.3E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 668 | 785 | 5.3E-41 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 57 | 193 | 7.3E-34 | IPR008974 |
| SMART | SM00061 | math_3 | 63 | 167 | 2.0E-9 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 61 | 186 | 25.888384 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 162 | 503 | 27.457294 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 419 | 436 | - | IPR018200 |
| Coils | Coil | Coil | 512 | 539 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021973075.2 | ubiquitin carboxyl-terminal hydrolase 12 isoform X3 [Helianthus annuus] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251UBX9 | ubiquitinyl hydrolase 1 OS=Helianthus annuus OX=4232 GN=UBP12 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology