Basic Information
Locus ID:
Ftri8G13403
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1147610 | 1149119 | + | Ftri8G13403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 50,276.37 Da | 53.25 | 81.21 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 232 | 255 | 0.1 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 135 | 158 | 0.032 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 316 | 428 | 2.1E-35 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 164 | 190 | 0.0043 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 70 | 206 | 8.8E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 207 | 319 | 1.7E-10 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 164 | 195 | 4.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 135 | 158 | 0.0013 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | 10.39137 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021996537.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Helianthus annuus] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251SYT5 | Putative DYW domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0354711 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology