Basic Information
Locus ID:
Ftri8G10832
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 73291240 | 73291629 | + | Ftri8G10832 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 14,453.48 Da | 37.51 | 76.98 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 40 | 87 | 8.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 96 | 2.33E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 94 | 2.7E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 41 | 87 | 10.895954 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022015165.1 | RING-H2 finger protein ATL51-like [Helianthus annuus] | 0 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2U1LKQ9 | RING-type E3 ubiquitin transferase OS=Artemisia annua OX=35608 GN=CTI12_AA304460 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 3 | Ftri1G10623, Ftri8G10832, Ftri9G18323 |