Basic Information
Locus ID:
Ftri8G10694
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 23428329 | 23429825 | + | Ftri8G10694 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 47,328.65 Da | 33.71 | 100.74 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 34 | 2.75E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 86 | 294 | 1.06E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 191 | 408 | 2.0E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 9 | 190 | 1.6E-10 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10780.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_022017705.1 | F-box protein At1g10780 [Helianthus annuus] | 0 |
| Q9SAC4 | F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6LLL3 | F-box domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_40056 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26399, jg26483, jg28405, jg30091 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3968 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026117 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g140760 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12803, Sbi_jg53087 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8787 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026944 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34071, Sgl34295, Sgl39697 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001412, gene:ENSEOMG00000025840 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0015710 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101760, pistato.v30105340 |
| Apiaceae | Apium graveolens | 2 | Ag1G00122, Ag3G00812 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G004500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712532 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.488.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G33557, Ftri8G10694 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G10780.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007703m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g09480.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g005840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1590 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1706 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07820 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g14050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1394 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002020 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25908 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.3250, AH02.4369, AH03.2152, BH03.2254, BH08.1880 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0537310, gene-QOZ80_6BG0490560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0236810.1, HORVU.MOREX.r3.5HG0486180.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005626, gene-QYE76_031183 |
| Poaceae | Oryza coarctata | 3 | Oco16G009550, Oco17G006400, Oco18G006610 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g36570.1, LOC_Os09g28120.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G202700, gene-BS78_07G162500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401369, Pt_Chr0601088, Pt_Chr0701913 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr0G028410, Chr0G028610, Chr16G015560, Chr17G015000 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G188200, Tel5E01G081300, Tel5E01G383300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG013340, gene_TRIDC3BG017810 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G108600.1, TraesCS3B02G127600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb037840_P001, Zm00001eb100430_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-30632, nbis-gene-3848, nbis-gene-58742 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24206, Zma_g30427 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.106, evm.TU.LG03.37 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g07670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1606 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3717 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20415 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18994 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.344 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005375 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2776 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21806 |
| Salicaceae | Populus euphratica | 3 | populus_peu02527, populus_peu33368, populus_peu33373 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598708 |
| Solanaceae | Solanum chilense | 1 | SOLCI002646500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012137 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12503 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1728 |
| Zosteraceae | Zostera marina | 4 | Zosma01g38510.v3.1, Zosma01g39780.v3.1, Zosma03g34940.v3.1 ... |