Basic Information
Locus ID:
Ftri8G06309
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6068787 | 6084042 | + | Ftri8G06309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 37,820.26 Da | 54.29 | 70.90 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 279 | 319 | 3.14556E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 278 | 324 | 8.7E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 279 | 325 | 1.51E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 263 | 329 | 2.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 280 | 318 | 3.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 280 | 319 | 11.530333 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_043627178.1 | probable E3 ubiquitin-protein ligase LUL3 [Erigeron canadensis] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6PLL8 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_05680 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology