Basic Information
Locus ID:
Ftri8G05646
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 77729865 | 77737633 | - | Ftri8G05646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 159,461.06 Da | 37.41 | 108.62 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 585 | 789 | 5.64101E-96 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 272 | 559 | 1.56181E-94 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1180 | 1400 | 1.4144E-122 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 867 | 1157 | 1.438E-73 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1200 | 1347 | 4.3E-32 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 612 | 742 | 7.8E-15 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 271 | 538 | 1.4E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 872 | 1109 | 7.9E-26 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1173 | 1411 | 1.15E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 269 | 563 | 2.22E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 611 | 803 | 1.88E-47 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 869 | 1162 | 5.23E-49 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 257 | 568 | 3.7E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1165 | 1418 | 1.4E-81 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 610 | 831 | 9.6E-61 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 835 | 1163 | 3.4E-53 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1208 | 1393 | 9.3E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 616 | 790 | 1.4E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 271 | 551 | 33.753654 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 869 | 1145 | 32.890419 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1182 | 1416 | 16.993601 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 585 | 813 | 19.461241 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 715 | 729 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021998088.1 | putative ABC transporter C family member 15 [Helianthus annuus] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251T2H7 | ABC-type xenobiotic transporter OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0372261 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology