Basic Information
Locus ID:
Ftri8G02497
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4244703 | 4247183 | - | Ftri8G02497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.43 | 51,035.85 Da | 45.57 | 87.30 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 176 | 249 | 1.8E-10 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 61 | 136 | 8.1E-13 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 256 | 1.78E-39 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 290 | 352 | 1.54E-6 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 147 | 257 | 1.5E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 146 | 1.3E-24 | IPR036770 |
| SMART | SM00248 | ANK_2a | 176 | 205 | 7.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 37 | 75 | 1900.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 79 | 108 | 0.0074 | IPR002110 |
| SMART | SM00184 | ring_2 | 297 | 346 | 0.006 | IPR001841 |
| SMART | SM00248 | ANK_2a | 113 | 143 | 0.2 | IPR002110 |
| SMART | SM00248 | ANK_2a | 219 | 248 | 2.1E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 176 | 204 | 12.354897 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 113 | 134 | 9.80474 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 219 | 251 | 12.04838 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 113 | 134 | 9.781353 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 219 | 250 | 10.68342 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 79 | 111 | 9.29725 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 297 | 347 | 9.391148 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 176 | 208 | 12.87639 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 312 | 321 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 235 | 249 | 3.4E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 177 | 192 | 3.4E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 439 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021989451.1 | E3 ubiquitin-protein ligase XBAT32 [Helianthus annuus] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TQ55 | Putative XB3-like protein OS=Helianthus annuus OX=4232 GN=XBAT32 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology