Basic Information
Locus ID:
Ftri8G02263
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3170024 | 3176707 | - | Ftri8G02263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 124,204.23 Da | 39.46 | 78.11 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 907 | 941 | 0.0058 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 346 | 521 | 3.57E-19 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 882 | 1093 | 2.09E-12 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 476 | 946 | 2.59E-39 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 799 | 1052 | 9.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 479 | 694 | 7.7E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 336 | 478 | 2.1E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 571 | 611 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 481 | 522 | 0.093 | IPR001680 |
| SMART | SM00320 | WD40_4 | 902 | 941 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 443 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 993 | 1034 | 460.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 819 | 856 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 859 | 899 | 2.6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.9E-15 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 1.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 527 | 568 | 22.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 909 | 943 | 9.731054 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.043597 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.893797 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 909 | 950 | 11.778342 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1125 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_021996715.1 | topless-related protein 4 isoform X2 [Helianthus annuus] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251SYY0 | Putative LIS1 homology motif protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0356681 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology