Basic Information
Locus ID:
Ftri8G01620
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 71496867 | 71504553 | + | Ftri8G01620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 154,490.61 Da | 40.45 | 90.17 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 462 | 504 | 8.99859E-20 | - |
| Pfam | PF04564 | U-box domain | 459 | 529 | 2.0E-15 | IPR003613 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1363 | 1387 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1143 | 1178 | 8.0E-5 | IPR001680 |
| SUPERFAMILY | SSF57850 | RING/U-box | 453 | 530 | 2.36E-23 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1128 | 1390 | 3.98E-26 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 583 | 1000 | 4.07E-12 | IPR016024 |
| Gene3D | G3DSA:2.130.10.10 | - | 1093 | 1268 | 1.1E-11 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 562 | 959 | 5.3E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 446 | 536 | 1.4E-24 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 1275 | 1390 | 1.1E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1140 | 1179 | 4.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1308 | 1344 | 25.0 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 461 | 525 | 2.0E-25 | IPR003613 |
| SMART | SM00320 | WD40_4 | 1347 | 1388 | 0.013 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1147 | 1178 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1147 | 1178 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1356 | 1390 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1356 | 1390 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 457 | 532 | 36.481434 | IPR003613 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1375 | 1389 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 374 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29340.1 | plant U-box 17. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato. | 0 |
| RefSeq | XP_021997634.1 | putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Helianthus annuus] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A251T210 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=LIN1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg11768, jg11769, jg11770, jg11771, jg31633, jg31634 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30049320, pistato.v30256780 |
| Apiaceae | Apium graveolens | 3 | Ag2G02459, Ag3G02527, Ag8G00225 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G011900, COCNU_07G002000 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702597, gene-LOC103706139 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1751.V1.1, AsparagusV1_03.2268.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri4G07535, Ftri7G18227, Ftri8G01620 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0877, Ceq06G1516 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0956, Cgl06G1574 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-141, nbisL1-mrna-8648 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.710, evm.TU.LG07.1111 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003863, Pov_00020671 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.91, BH01.509, BH02.80, CH02.102 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0000840, gene-QOZ80_1BG0049330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_051444, gene-QYE76_051560, gene-QYE76_051566 |
| Poaceae | Oryza coarctata | 2 | Oco01G005770, Oco02G005870 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g12930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G006500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204871 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr21G016220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G274000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020830, gene_TRIDC3BG031130 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G154900.1, TraesCS3B02G181200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb119290_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-24273, nbis-gene-24274, nbis-gene-32721 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7183, Zma_g9505 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.437, evm.TU.Scaffold_4_RagTag.1931 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13099, nbisL1-mrna-16388, nbisL1-mrna-25645 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12295, nbisL1-mrna-6585 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13044, nbisL1-mrna-13045, nbisL1-mrna-16830 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000018l.158, add.evm.TU.utg000033l.95 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000143, Maker00011993, Maker00014879 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20232, nbisL1-mrna-23194 |
| Salicaceae | Populus euphratica | 5 | populus_peu15357, populus_peu21947, populus_peu33000 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603413, gene-LOC132622109 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107017250, gene-LOC107025502, gene-LOC114077896 |