Basic Information
Locus ID:
Ftri8G01563
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 71096699 | 71100026 | - | Ftri8G01563 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 47,104.11 Da | 35.64 | 66.00 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 300 | 328 | 2.8E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 339 | 366 | 4.4E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 255 | 289 | 1.69E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 332 | 369 | 2.31E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 295 | 327 | 1.12E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 292 | 330 | 3.4E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 370 | 403 | 8.6E-6 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 252 | 291 | 4.6E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 331 | 369 | 6.0E-15 | - |
| SMART | SM00547 | zf_4 | 341 | 365 | 1.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 263 | 287 | 8.5E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 374 | 399 | 6.9 | IPR001876 |
| SMART | SM00547 | zf_4 | 302 | 326 | 7.9E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 300 | 329 | 9.992108 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 261 | 290 | 9.596881 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 339 | 368 | 10.692225 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 265 | 284 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 343 | 362 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 304 | 323 | - | IPR001876 |
| Coils | Coil | Coil | 222 | 242 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_023765847.1 | zinc finger protein VAR3, chloroplastic [Lactuca sativa] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6LM78 | Zinc finger protein VAR3, chloroplastic OS=Mikania micrantha OX=192012 GN=E3N88_40290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology