Basic Information
Locus ID:
Ftri8G00955
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 78469773 | 78470928 | + | Ftri8G00955 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 39,783.95 Da | 40.52 | 72.37 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 123 | 166 | 9.31656E-20 | - |
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 3.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 172 | 5.55E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 171 | 1.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 165 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 166 | 12.341748 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 214 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021997990.1 | RING-H2 finger protein ATL46 [Helianthus annuus] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251T282 | Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0371431 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology