Basic Information
Locus ID:
Ftri8G00768
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 69926219 | 69936267 | + | Ftri8G00768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 114,895.35 Da | 45.35 | 87.51 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 1 | 83 | 1.14161E-13 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 507 | 754 | 1.2E-61 | IPR024729 |
| Pfam | PF00917 | MATH domain | 5 | 81 | 1.0E-9 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 764 | 972 | 1.1E-49 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 85 | 403 | 2.2E-32 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 81 | 432 | 1.39E-76 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 4 | 82 | 9.48E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 81 | 407 | 4.0E-68 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 565 | 679 | 6.1E-38 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 2 | 80 | 4.3E-5 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 680 | 777 | 1.7E-24 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 84 | 406 | 29.989351 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_021973075.2 | ubiquitin carboxyl-terminal hydrolase 12 isoform X3 [Helianthus annuus] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251UBX9 | ubiquitinyl hydrolase 1 OS=Helianthus annuus OX=4232 GN=UBP12 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology