Basic Information
Locus ID:
Ftri8G00594
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 21594266 | 21597454 | + | Ftri8G00594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 36,229.94 Da | 65.37 | 72.61 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14369 | zinc-ribbon | 53 | 84 | 7.1E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 239 | 281 | 1.0E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 286 | 2.17E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 287 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 240 | 280 | 1.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 240 | 281 | 11.928664 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 322 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_024979933.1 | probable E3 ubiquitin-protein ligase RHC1A [Cynara cardunculus var. scolymus] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A251TK78 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=RHC1A PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology