Basic Information
Locus ID:
Ftri7G32772
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UBP14
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 11114999 | 11120652 | + | Ftri7G32772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 87,597.91 Da | 40.01 | 79.48 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02658 | Peptidase_C19B | 307 | 784 | 1.38264E-121 | - |
| CDD | cd14295 | UBA1_atUBP14 | 618 | 661 | 1.934E-18 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 306 | 783 | 1.7E-38 | IPR001394 |
| Pfam | PF00627 | UBA/TS-N domain | 617 | 654 | 8.7E-6 | IPR015940 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 178 | 251 | 4.3E-16 | IPR001607 |
| Pfam | PF00627 | UBA/TS-N domain | 663 | 698 | 3.8E-10 | IPR015940 |
| Pfam | PF17807 | Variant UBP zinc finger | 13 | 72 | 2.5E-10 | IPR041432 |
| SUPERFAMILY | SSF46934 | UBA-like | 662 | 701 | 1.2E-10 | IPR009060 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 264 | 1.65E-31 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 302 | 786 | 4.12E-74 | IPR038765 |
| Gene3D | G3DSA:1.10.8.10 | - | 616 | 661 | 1.5E-17 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 299 | 788 | 1.0E-79 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 251 | 3.5E-39 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 102 | 9.6E-22 | IPR013083 |
| Gene3D | G3DSA:1.10.8.10 | - | 662 | 715 | 8.4E-16 | - |
| SMART | SM00165 | uba_6 | 618 | 656 | 2.0E-5 | IPR015940 |
| SMART | SM00290 | Zf_UBP_1 | 177 | 232 | 1.0E-21 | IPR001607 |
| SMART | SM00165 | uba_6 | 663 | 700 | 3.6E-10 | IPR015940 |
| PIRSF | PIRSF016308 | UBP | 2 | 787 | 3.9E-259 | IPR016652 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 176 | 250 | 16.962746 | IPR001607 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 616 | 657 | 10.474544 | IPR015940 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 306 | 786 | 40.217712 | IPR028889 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 661 | 701 | 13.583069 | IPR015940 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 307 | 322 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 731 | 749 | - | IPR018200 |
| Coils | Coil | Coil | 478 | 503 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20630.1 | ubiquitin-specific protease 14. Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency. | 0 |
| RefSeq | XP_022001443.1 | ubiquitin carboxyl-terminal hydrolase 14 [Helianthus annuus] | 0 |
| Q8L6Y1 | Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana OX=3702 GN=UBP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SSW0 | Ubiquitin carboxyl-terminal hydrolase OS=Helianthus annuus OX=4232 GN=UBP14 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38312 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12397 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008387 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18793, Sbi_jg37227 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5053 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006986 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22962, Sgl22969, Sgl28082 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008745, gene:ENSEOMG00000031281 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0020820, CQ.Regalona.r1.4BG0021600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30160200 |
| Apiaceae | Apium graveolens | 1 | Ag4G02697 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G004050, scaffold004260G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709890 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.267.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G32772 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020069m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043160.2N, BniB07g031450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1181 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1323 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g11040 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0172s00020.v1.0, Dusal.0172s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g16940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2476 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1709 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00005221, Pov_00023321, Pov_00023323, Pov_00031516 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11391, Lb7G35260, Lb7G35262 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.445, AH04.361, BH02.471, BH02.55, CH02.515, CH02.63 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0011830, gene-QOZ80_1BG0060450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0240180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050458 |
| Poaceae | Oryza coarctata | 2 | Oco01G003200, Oco02G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G042900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G005470, Chr08G005940, Chr08G005950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G210700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG015320, gene_TRIDC3BG019870 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G122900.1, TraesCS3B02G142100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb336890_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13186, nbis-gene-6809 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10060, Zma_g7714 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2055, evm.TU.LG14.1234 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g24020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.247 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21970 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13865 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7238, nbisL1-mrna-7239 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.398 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009382 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6794 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12590 |
| Salicaceae | Populus euphratica | 3 | populus_peu00439, populus_peu17506, populus_peu37691 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620376 |
| Solanaceae | Solanum chilense | 1 | SOLCI003375900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026308 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20660_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0299 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19560.v3.1 |