Basic Information
Locus ID:
Ftri7G31324
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 60986733 | 60996517 | + | Ftri7G31324 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 123,696.12 Da | 37.65 | 78.03 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 903 | 937 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 459 | 493 | 0.0022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 820 | 1082 | 6.41E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 353 | 675 | 3.62E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 760 | 1092 | 1.1E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 548 | 692 | 4.3E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 547 | 4.1E-31 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.5E-15 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.2E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 810 | 852 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 898 | 937 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 446 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 493 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 583 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 537 | 0.084 | IPR001680 |
| SMART | SM00320 | WD40_4 | 855 | 895 | 0.87 | IPR001680 |
| SMART | SM00320 | WD40_4 | 586 | 626 | 5.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 502 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.092879 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 905 | 946 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 905 | 937 | 9.757418 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.818093 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1085 | 1120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1120 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_021981209.1 | topless-related protein 4 isoform X2 [Helianthus annuus] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6PKY8 | Topless-related protein 4-like OS=Mikania micrantha OX=192012 GN=E3N88_09309 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology