Basic Information
Locus ID:
Ftri7G28108
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7494419 | 7500306 | + | Ftri7G28108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 162,757.45 Da | 34.43 | 104.61 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1205 | 1425 | 5.64365E-119 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 582 | 782 | 1.53632E-103 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 890 | 1182 | 4.71659E-86 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 271 | 556 | 6.66912E-94 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 271 | 536 | 1.1E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 891 | 1131 | 1.9E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1224 | 1372 | 3.0E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 602 | 734 | 2.7E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 579 | 804 | 3.1E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1198 | 1433 | 1.74E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 262 | 560 | 5.23E-32 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 890 | 1189 | 1.57E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 573 | 817 | 1.2E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1190 | 1443 | 1.2E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 851 | 1188 | 1.8E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 236 | 564 | 6.8E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 609 | 782 | 7.6E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1233 | 1418 | 1.6E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 269 | 548 | 30.160007 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 582 | 805 | 21.642103 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1209 | 1441 | 17.727222 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 890 | 1156 | 33.850624 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 707 | 721 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_022001896.1 | ABC transporter C family member 3 isoform X1 [Helianthus annuus] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SVS9 | ABC-type xenobiotic transporter OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0412251 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology