Basic Information
Locus ID:
Ftri7G27255
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Poly(A) polymerase predicted RNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 8924951 | 8931979 | + | Ftri7G27255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 69,024.58 Da | 48.09 | 80.62 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 64 | 219 | 5.21551E-28 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 25 | 369 | 6.6E-105 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 101 | 173 | 1.0E-6 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 372 | 429 | 6.3E-12 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 372 | 497 | 1.08E-34 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 220 | 369 | 2.62E-63 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 24 | 218 | 2.94E-49 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 57 | 213 | 2.8E-150 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 372 | 487 | 2.4E-25 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 25 | 367 | 2.8E-150 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 14 | 595 | 2.1E-214 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 573 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25850.9 | - | 0 |
| RefSeq | XP_022001674.1 | nuclear poly(A) polymerase 2 [Helianthus annuus] | 0 |
| O82312 | Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=PAPS2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251STV4 | Poly(A) polymerase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0409651 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology