Basic Information
Locus ID:
Ftri7G20438
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1537536 | 1539598 | + | Ftri7G20438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 45,137.92 Da | 57.96 | 97.01 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 179 | 309 | 4.0E-15 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 165 | 310 | 1.96E-21 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 20 | 113 | 1.44E-8 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 165 | 310 | 5.2E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 22 | 142 | 1.2E-5 | IPR036378 |
| SMART | SM00554 | fasc_3 | 205 | 310 | 1.1E-14 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 167 | 307 | 13.412138 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 22 | 175 | 8.224648 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 389 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45470.1 | FASCICLIN-like arabinogalactan protein 8. | 0 |
| RefSeq | XP_022002899.1 | fasciclin-like arabinogalactan protein 10 [Helianthus annuus] | 0 |
| O22126 | Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6PF49 | FAS1 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_07897 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology