Basic Information
Locus ID:
Ftri7G11446
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7514514 | 7520272 | + | Ftri7G11446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 127,140.03 Da | 35.05 | 103.79 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1 | 253 | 5.54312E-85 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 576 | 868 | 1.35708E-92 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 279 | 479 | 1.18989E-101 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 891 | 1111 | 4.50988E-123 | - |
| Pfam | PF00005 | ABC transporter | 910 | 1058 | 3.4E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 5 | 232 | 6.5E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 299 | 431 | 2.1E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 577 | 817 | 2.0E-36 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 276 | 501 | 2.98E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 4 | 257 | 1.57E-23 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 576 | 875 | 3.4E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 885 | 1119 | 1.78E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 261 | 4.3E-38 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 271 | 524 | 5.4E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 876 | 1129 | 1.1E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 536 | 874 | 8.9E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 919 | 1104 | 4.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 306 | 479 | 1.8E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 895 | 1127 | 18.214083 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 576 | 842 | 36.484066 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1 | 245 | 26.44277 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 279 | 502 | 21.555401 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 404 | 418 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_022001819.1 | ABC transporter C family member 3 [Helianthus annuus] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SVI8 | ABC-type xenobiotic transporter OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0411201 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology