Basic Information
Locus ID:
Ftri7G05446
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 5786770 | 5787996 | - | Ftri7G05446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.62 | 22,164.62 Da | 101.70 | 86.39 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 114 | 157 | 1.1396E-15 | - |
| Pfam | PF13639 | Ring finger domain | 114 | 157 | 9.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 165 | 3.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 164 | 1.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 115 | 156 | 0.0031 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 115 | 157 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58580.1 | TOXICOS EN LEVADURA 63. | 0 |
| RefSeq | XP_022001998.1 | RING-H2 finger protein ATL2 [Helianthus annuus] | 0 |
| Q9LUZ9 | RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251SUK6 | Putative TOXICOS EN LEVADURA 2 OS=Helianthus annuus OX=4232 GN=ATL2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology