Basic Information
Locus ID:
Ftri7G05315
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 13382019 | 13384119 | - | Ftri7G05315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 43,884.49 Da | 35.78 | 86.31 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 198 | 327 | 5.8E-15 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 36 | 154 | 2.6E-7 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 31 | 176 | 8.11E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 192 | 328 | 1.57E-19 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 195 | 327 | 5.8E-12 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 23 | 171 | 1.8E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 223 | 328 | 2.3E-16 | IPR000782 |
| SMART | SM00554 | fasc_3 | 61 | 176 | 0.41 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 185 | 325 | 11.943115 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 25 | 173 | 10.979067 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 383 | - | - |
| Coils | Coil | Coil | 343 | 363 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_022028417.1 | fasciclin-like arabinogalactan protein 2 [Helianthus annuus] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6MX98 | Fasciclin-like arabinogalactan protein 2 OS=Mikania micrantha OX=192012 GN=E3N88_27619 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology