Basic Information
Locus ID:
Ftri7G04438
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7647418 | 7658203 | + | Ftri7G04438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 69,834.79 Da | 58.73 | 71.09 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 160 | 465 | 3.48393E-161 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 161 | 464 | 6.6E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 73 | 110 | 6.6E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 158 | 480 | 3.73E-88 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 70 | 112 | 2.09E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 156 | 477 | 1.5E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 68 | 114 | 3.3E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 161 | 467 | 49.77372 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 73 | 110 | 12.034773 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 162 | 177 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 73 | 110 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 535 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_024996114.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Cynara cardunculus var. scolymus] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6PH05 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Mikania micrantha OX=192012 GN=E3N88_08518 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology