Basic Information
Locus ID:
Ftri7G03166
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 59780166 | 59787587 | - | Ftri7G03166 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 61,871.61 Da | 25.20 | 101.42 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 259 | 361 | 3.83743E-25 | - |
| CDD | cd00030 | C2 | 432 | 532 | 2.01565E-24 | - |
| Pfam | PF00168 | C2 domain | 430 | 531 | 1.0E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 257 | 361 | 2.4E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 243 | 4.8E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 255 | 386 | 8.18E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 424 | 547 | 1.79E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 250 | 385 | 3.1E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 419 | 549 | 5.4E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 431 | 529 | 2.3E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 258 | 358 | 1.7E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 238 | 359 | 20.427988 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 244 | 28.137259 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 413 | 530 | 19.589989 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 495 | 503 | 7.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 447 | 459 | 7.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 473 | 486 | 7.1E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_022027410.1 | synaptotagmin-5 [Helianthus annuus] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251V3W1 | Putative calcium-dependent lipid-binding (CaLB domain) family protein OS=Helianthus annuus OX=4232 GN=SYTE PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology