Basic Information
Locus ID:
Ftri6G32788
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 68827950 | 68840505 | - | Ftri6G32788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 126,560.66 Da | 41.27 | 77.50 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 57 | 180 | 5.2824E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 198 | 491 | 1.92388E-145 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 850 | 1060 | 2.2E-56 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 200 | 230 | 4.1E-8 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 588 | 840 | 5.5E-77 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 242 | 486 | 4.2E-26 | IPR001394 |
| Pfam | PF00917 | MATH domain | 62 | 181 | 8.4E-20 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 195 | 508 | 4.51E-83 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 53 | 186 | 1.57E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 490 | 2.3E-75 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 54 | 195 | 9.9E-53 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 766 | 863 | 1.3E-28 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 648 | 765 | 3.3E-45 | - |
| SMART | SM00061 | math_3 | 57 | 161 | 3.3E-22 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 55 | 180 | 39.184525 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 200 | 489 | 29.560188 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 201 | 216 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 406 | 423 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021973075.2 | ubiquitin carboxyl-terminal hydrolase 12 isoform X3 [Helianthus annuus] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251UBX9 | ubiquitinyl hydrolase 1 OS=Helianthus annuus OX=4232 GN=UBP12 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology