Basic Information
Locus ID:
Ftri6G28641
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 67629203 | 67648531 | - | Ftri6G28641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 132,880.61 Da | 43.10 | 78.30 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 72 | 195 | 5.87999E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 213 | 541 | 5.19389E-168 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 215 | 536 | 8.9E-47 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 900 | 1111 | 2.6E-53 | IPR029346 |
| Pfam | PF00917 | MATH domain | 77 | 196 | 8.9E-20 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 640 | 890 | 2.0E-76 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 71 | 205 | 1.39E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 210 | 567 | 3.53E-97 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 68 | 211 | 1.3E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 212 | 540 | 3.1E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 816 | 913 | 1.2E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 700 | 815 | 2.1E-48 | - |
| SMART | SM00061 | math_3 | 72 | 176 | 4.4E-22 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 70 | 195 | 37.471367 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 215 | 539 | 40.088963 | IPR028889 |
| ProSitePatterns | PS00304 | Small, acid-soluble spore proteins, alpha/beta type, signature 1. | 626 | 635 | - | IPR018126 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 216 | 231 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 455 | 472 | - | IPR018200 |
| Coils | Coil | Coil | 552 | 575 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021973350.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Helianthus annuus] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251UD33 | ubiquitinyl hydrolase 1 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr07g0197021 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology