Basic Information
Locus ID:
Ftri6G26839
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 45849750 | 45851563 | + | Ftri6G26839 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 57,230.30 Da | 35.22 | 87.01 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 305 | 326 | 0.02 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 128 | 174 | 5.2E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 230 | 276 | 1.4E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 407 | 430 | 0.0047 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 102 | 127 | 0.0024 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 369 | 395 | 0.06 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 204 | 224 | 0.011 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 334 | 359 | 3.7E-4 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 301 | 492 | 5.31E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 34 | 180 | 4.8E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 305 | 469 | 9.2E-34 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 181 | 304 | 1.2E-16 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 234 | 262 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 334 | 367 | 1.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 130 | 164 | 7.4E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 407 | 430 | 0.0031 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | 9.437737 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 331 | 366 | 9.273317 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 128 | 162 | 11.575191 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47840.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021972576.1 | pentatricopeptide repeat-containing protein At4g37170 [Helianthus annuus] | 0 |
| Q9STS9 | Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E43 PE=3 SV=1 | 0 | |
| TrEMBL | A0A251U9S4 | Putative tetratricopeptide-like helical domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr07g0189151 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59044, Sbi_jg63579 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23302 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02459, Sgl07612 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0024540, CQ.Regalona.r1.6AG0008160 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G26839 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.999, evm.TU.LG25.339 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26870, gene.Posoc03g26890 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7526 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2415 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.240 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001976, Maker00002066 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1854 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16337_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0297 |