Basic Information
Locus ID:
Ftri6G25733
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 70498759 | 70499985 | - | Ftri6G25733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 40,146.11 Da | 75.53 | 62.53 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 199 | 243 | 1.02922E-21 | - |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 1.1E-9 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 270 | 354 | 9.5E-22 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 10 | 43 | 4.5E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 246 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 246 | 1.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 11.869652 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 127 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_021973820.1 | probable E3 ubiquitin-protein ligase RHC2A [Helianthus annuus] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A251UEL4 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=RHC2A PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology