Basic Information
Locus ID:
Ftri6G22339
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UBC20
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13275788 | 13277126 | - | Ftri6G22339 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 18,248.58 Da | 56.20 | 84.97 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 93 | 159 | 3.99806E-29 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 76 | 157 | 7.2E-23 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 91 | 160 | 4.06E-22 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 27 | 162 | 1.4E-24 | IPR016135 |
| SMART | SM00212 | ubc_7 | 36 | 163 | 3.3E-12 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 163 | 20.818188 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 92 | 107 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20060.1 | ubiquitin-conjugating enzyme19. Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus. | 0 |
| RefSeq | XP_021970865.1 | ubiquitin-conjugating enzyme E2 20 [Helianthus annuus] | 0 |
| Q9LJZ5 | Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana OX=3702 GN=UBC19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6P3V8 | UBC core domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_11859 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Ftri6G22339.