Basic Information
Locus ID:
Ftri6G19022
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 67839237 | 67849637 | + | Ftri6G19022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 124,362.39 Da | 43.97 | 78.03 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 783 | 823 | 3.6176E-17 | - |
| Pfam | PF00628 | PHD-finger | 783 | 825 | 1.7E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 512 | 565 | 1.6E-11 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 717 | 766 | 2.7E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 853 | 915 | 2.44E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1007 | 1100 | 9.3E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 778 | 827 | 3.1E-16 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 775 | 832 | 1.5E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 854 | 915 | 3.0E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1002 | 1110 | 1.8E-6 | - |
| SMART | SM00249 | PHD_3 | 783 | 824 | 3.3E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 857 | 914 | 6.8E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 781 | 826 | 10.5669 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 965 | 1115 | 10.616902 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 855 | 916 | 8.6178 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 784 | 823 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 858 | 913 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 348 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021973272.1 | uncharacterized protein LOC110868422 [Helianthus annuus] | 0 |
| Q9Z0E3 | Autoimmune regulator OS=Mus musculus OX=10090 GN=Aire PE=1 SV=1 | 0 | |
| TrEMBL | A0A251UCA8 | Putative zinc finger, RING/FYVE/PHD-type, Acyl-CoA N-acyltransferase, Jas TPL-binding domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr07g0196191 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology