Basic Information
Locus ID:
Ftri6G05228
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 21594328 | 21602780 | + | Ftri6G05228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 99,973.74 Da | 46.56 | 77.22 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 722 | 872 | 1.31676E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 291 | 872 | 1.5E-77 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 289 | 872 | 2.35E-99 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 604 | 880 | 4.5E-53 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 275 | 493 | 2.5E-61 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 5 | 142 | 4.6E-5 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 291 | 876 | 49.730804 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 292 | 307 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 819 | 836 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_024962612.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Cynara cardunculus var. scolymus] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6P6L0 | Ubiquitin carboxyl-terminal hydrolase OS=Mikania micrantha OX=192012 GN=E3N88_11895 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology