Basic Information
Locus ID:
Ftri5G32707
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
AMSH-like ubiquitin thioesterase 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 941871 | 948526 | - | Ftri5G32707 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 26,930.07 Da | 52.30 | 85.62 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 61 | 238 | 5.53562E-95 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 61 | 167 | 2.5E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 64 | 193 | 9.68E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 42 | 240 | 4.9E-67 | - |
| SMART | SM00232 | pad1_6 | 63 | 191 | 1.5E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 64 | 194 | 27.452255 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_021999145.1 | AMSH-like ubiquitin thioesterase 2 isoform X2 [Helianthus annuus] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251T5A5 | Putative associated molecule with the SH3 domain of STAM 2 OS=Helianthus annuus OX=4232 GN=AMSH2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology