Basic Information
Locus ID:
Ftri5G27562
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 3820691 | 3822110 | + | Ftri5G27562 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 31,947.06 Da | 36.61 | 61.69 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 78 | 4.9E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 14 | 79 | 5.37E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 18 | 88 | 1.1E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 24 | 92 | 3.7E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 23 | 87 | 9.57564 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 296 | - | - |
| Coils | Coil | Coil | 212 | 255 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_035840872.1 | binding partner of ACD11 1 isoform X4 [Helianthus annuus] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251RTM7 | Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0566011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology