Basic Information
Locus ID:
Ftri5G25399
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 6021923 | 6025902 | + | Ftri5G25399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 56,514.26 Da | 26.04 | 107.84 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 360 | 3.03392E-22 | - |
| Pfam | PF00168 | C2 domain | 264 | 352 | 8.7E-19 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 9.2E-18 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 262 | 391 | 7.89E-24 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 417 | 2.0E-27 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 6.1E-15 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 25.527695 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 365 | 18.318785 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 523 | - | - |
| Coils | Coil | Coil | 394 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_024962822.1 | synaptotagmin-5 [Cynara cardunculus var. scolymus] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6NNJ0 | Synaptotagmin-5 OS=Mikania micrantha OX=192012 GN=E3N88_19390 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology