Basic Information
Locus ID:
Ftri5G25282
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1088668 | 1089747 | + | Ftri5G25282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 37,470.93 Da | 32.49 | 78.01 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 131 | 174 | 4.96911E-19 | - |
| Pfam | PF13639 | Ring finger domain | 131 | 174 | 2.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 180 | 2.52E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 179 | 9.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 132 | 173 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 174 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 299 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_023739096.1 | RING-H2 finger protein ATL46 [Lactuca sativa] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6NQ38 | RING-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_19870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology