Basic Information
Locus ID:
Ftri5G21974
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 30271868 | 30272746 | + | Ftri5G21974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 33,613.85 Da | 46.25 | 102.36 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 39 | 5.9E-4 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 213 | 278 | 2.8E-4 | IPR013187 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 110 | 284 | 5.23E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 115 | 1.96E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 82 | 1.9E-6 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 94 | 283 | 3.0E-15 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021991364.1 | putative F-box only protein 15 [Helianthus annuus] | 0 |
| TrEMBL | A0A251VM69 | Putative F-box domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0010311 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.850.V1.1 |
| Asteraceae | Flaveria trinervia | 25 | Ftri10G02265, Ftri10G33221, Ftri11G12082, Ftri11G33565 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020523 |