Basic Information
Locus ID:
Ftri5G14987
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11422393 | 11427688 | + | Ftri5G14987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 71,987.65 Da | 46.54 | 86.75 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 252 | 1.03849E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 128 | 2.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 219 | 244 | 0.076 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 477 | 633 | 1.7E-48 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 44 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 167 | 204 | 1.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 265 | 1.4E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 167 | 399 | 5.5E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 166 | 1.5E-42 | IPR015943 |
| SMART | SM00320 | WD40_4 | 207 | 245 | 0.67 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 6.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 164 | 0.81 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 204 | 9.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0022 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 172 | 207 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 172 | 213 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 168 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 11.471045 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 191 | 205 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 191 | 205 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 31 | 45 | 1.6E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 637 | 16.614412 | IPR026962 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_035841169.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Helianthus annuus] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251S053 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0517881 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology