Basic Information
Locus ID:
Ftri5G08796
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Necessary for protein translocation in the endoplasmic reticulum
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8087393 | 8089680 | + | Ftri5G08796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.96 | 8,506.82 Da | 46.87 | 89.52 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03911 | Sec61beta family | 36 | 75 | 2.0E-18 | IPR016482 |
| PIRSF | PIRSF006398 | Sec61_beta | 2 | 82 | 6.5E-26 | IPR030671 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60540.1 | Preprotein translocase Sec, Sec61-beta subunit protein. | 0 |
| RefSeq | XP_024987516.1 | protein transport protein Sec61 subunit beta-like [Cynara cardunculus var. scolymus] | 0 |
| P38389 | Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1 | 0 | |
| TrEMBL | A0A118JY32 | Protein transport protein Sec61 subunit beta OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_000796 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35865, jg8273 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7188 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg3466 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6500 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000220 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11351, Sgl16736 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0007100 |
| Apiaceae | Apium graveolens | 5 | Ag10G00569, Ag10G00587, Ag5G00900, Ag5G02889, Ag8G01647 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G003010, COCNU_04G014200, COCNU_06G002110 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103709701, gene-LOC103718128, gene-LOC120110167 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G10025, Ftri15G30559, Ftri2G03569, Ftri5G08796 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G45070.1, AT3G60540.1, AT5G60460.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001704m.g.v1.0, Thhalv10006343m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g27130.v2.2, Sp5g02680.v2.2, Sp6g22050.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g003490.2N, BniB08g011790.2N, BniB08g029330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1115 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1134, Cgl08G1778 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g19880, gene.Cymno03g00090, gene.Cymno05g01510 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.617 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002646, Pov_00031508 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10919 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2057, AH04.18, AH05.95, AH06.2653, BH02.2111, CH04.24 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0021290, gene-QOZ80_1BG0071110 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0266020.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003787, gene-QYE76_053356, gene-QYE76_065257 |
| Poaceae | Oryza coarctata | 3 | Oco01G012810, Oco02G012910, Oco23G002830 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g38510.1, LOC_Os11g01300.1, LOC_Os12g01260.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G158500, gene-BS78_05G002100 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G017420, Chr03G009190, Chr05G016560, Chr08G009330 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G359500, Tel4E01G209800, Tel5E01G034200 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG030480, gene_TRIDC3BG034700 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS3A02G207800.1.cds1, TraesCS3B02G234900.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb159930_P001, Zm00001eb266430_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25855, nbis-gene-26941 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18317, Zma_g24583 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g03040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.726 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19509, nbisL1-mrna-30323, nbisL1-mrna-8398 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-18375, nbisL1-mrna-20245, nbisL1-mrna-8222 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16106, nbisL1-mrna-7080 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.161, add.evm.TU.utg000018l.48 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18451, nbisL1-mrna-8080 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15074, nbisL1-mrna-22753, nbisL1-mrna-9763 |
| Salicaceae | Populus euphratica | 2 | populus_peu31825, populus_peu35483 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605959, gene-LOC132635031, gene-LOC132640736 |
| Solanaceae | Solanum chilense | 4 | SOLCI002190600, SOLCI004534000, SOLCI004534200 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107013798, gene-LOC107018450, gene-LOC107018865 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.29592_chr10_+, gene_15128, gene_851 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2044 |
| Zosteraceae | Zostera marina | 4 | Zosma01g17440.v3.1, Zosma04g25670.v3.1, Zosma05g27860.v3.1 ... |