Basic Information
Locus ID:
Ftri5G06441
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7582505 | 7583406 | - | Ftri5G06441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 30,528.86 Da | 51.66 | 84.74 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 87 | 130 | 1.47681E-18 | - |
| Pfam | PF13639 | Ring finger domain | 87 | 130 | 1.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 75 | 135 | 3.09E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 138 | 2.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 88 | 129 | 8.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 88 | 130 | 13.226928 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 246 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022017220.1 | RING-H2 finger protein ATL51 [Helianthus annuus] | 0 |
| Q9LF64 | RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251S5A1 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0520801 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology