Basic Information
Locus ID:
Ftri5G03326
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4507612 | 4515862 | - | Ftri5G03326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 39,925.50 Da | 65.32 | 89.51 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 295 | 337 | 1.25099E-15 | - |
| Pfam | PF13639 | Ring finger domain | 295 | 337 | 3.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 288 | 342 | 1.81E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 345 | 6.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 296 | 336 | 6.6E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 292 | 345 | 0.0031 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 296 | 337 | 12.592549 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_021986117.1 | E3 ubiquitin protein ligase RIE1 [Helianthus annuus] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251VSD0 | Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0028471 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 2 | Ftri5G03326, Ftri5G14202 |