Basic Information
Locus ID:
Ftri5G00132
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11312106 | 11318968 | - | Ftri5G00132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 127,319.15 Da | 50.64 | 75.23 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 442 | 768 | 2.17352E-73 | - |
| CDD | cd18793 | SF2_C_SNF | 962 | 1100 | 9.78373E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 535 | 845 | 2.7E-55 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 884 | 920 | 2.1E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 991 | 1090 | 8.9E-15 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 881 | 926 | 8.94E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 776 | 1147 | 3.19E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 431 | 768 | 4.13E-35 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 877 | 932 | 1.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 529 | 634 | 4.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 652 | 769 | 2.3E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 783 | 1148 | 2.7E-64 | IPR027417 |
| SMART | SM00184 | ring_2 | 884 | 922 | 9.1E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1007 | 1090 | 1.3E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 438 | 745 | 3.2E-13 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 884 | 923 | 11.294285 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 524 | 730 | 11.389318 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 984 | 1143 | 14.597016 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 899 | 908 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 656 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_022018165.1 | helicase-like transcription factor CHR28 isoform X1 [Helianthus annuus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6NPS7 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related OS=Mikania micrantha OX=192012 GN=E3N88_19044 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology