Basic Information
Locus ID:
Ftri4G32617
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3749057 | 3753845 | + | Ftri4G32617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 54,766.84 Da | 44.83 | 81.50 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 6.4E-17 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 214 | 272 | 4.2E-7 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 208 | 3.9E-5 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 5.71E-46 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 375 | 1.73E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 306 | 376 | 3.5E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 155 | 9.7E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 156 | 269 | 1.3E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 2.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 11.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.59 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 1.9E-4 | IPR002110 |
| SMART | SM00184 | ring_2 | 319 | 368 | 0.0089 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.287877 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.68342 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.17737 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 10.63275 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.29202 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 9.967073 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 478 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_022000226.1 | E3 ubiquitin-protein ligase XBAT33 [Helianthus annuus] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6LXR3 | RING-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_38879 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology