Basic Information
Locus ID:
Ftri4G32413
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 72155515 | 72159147 | + | Ftri4G32413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 30,783.26 Da | 76.91 | 57.43 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 193 | 234 | 3.26232E-22 | - |
| Pfam | PF13639 | Ring finger domain | 192 | 234 | 2.2E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 5.9E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 239 | 1.72E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 240 | 3.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 193 | 233 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 234 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 269 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_021988570.1 | probable E3 ubiquitin-protein ligase RHC1A [Helianthus annuus] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A251TK78 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=RHC1A PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology