Basic Information
Locus ID:
Ftri4G26866
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 81694223 | 81700265 | - | Ftri4G26866 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 39,968.98 Da | 65.08 | 67.62 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 301 | 341 | 3.51235E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 300 | 346 | 7.3E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 301 | 347 | 9.42E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 351 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 302 | 340 | 4.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 302 | 341 | 11.604098 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024979251.1 | probable E3 ubiquitin-protein ligase LUL4 [Cynara cardunculus var. scolymus] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6PLL8 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_05680 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology