Basic Information
Locus ID:
Ftri4G26549
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Oligouridylate-binding protein 1B-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 80981965 | 80987486 | + | Ftri4G26549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 40,737.28 Da | 47.33 | 71.17 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 1.00845E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 5.85315E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 260 | 335 | 1.38715E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 328 | 1.4E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 8.5E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 1.3E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 246 | 339 | 7.74E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 51 | 216 | 4.89E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 239 | 1.0E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 1.3E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 240 | 339 | 3.9E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 5.7E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 7.1E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 261 | 331 | 2.7E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 14.965146 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 17.404068 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | 14.521706 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_024961694.1 | oligouridylate-binding protein 1B-like [Cynara cardunculus var. scolymus] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6PP38 | RRM domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_05629 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology