Basic Information
Locus ID:
Ftri4G25097
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin fusion degradation protein 1 homolog isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 36525701 | 36530482 | + | Ftri4G25097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 34,561.30 Da | 51.98 | 67.44 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 37 | 177 | 4.1E-51 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 101 | 175 | 3.3E-25 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 50 | 99 | 1.4E-19 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 289 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38930.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_024988098.1 | ubiquitin fusion degradation protein 1 homolog isoform X1 [Cynara cardunculus var. scolymus] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A103XTN4 | Ubiquitin fusion degradation protein UFD1 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_001273 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology