Basic Information
Locus ID:
Ftri4G24808
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 72655173 | 72656245 | + | Ftri4G24808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 38,426.38 Da | 66.75 | 74.73 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 168 | 210 | 1.44034E-17 | - |
| Pfam | PF13639 | Ring finger domain | 167 | 210 | 1.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 216 | 1.46E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 220 | 1.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 168 | 209 | 5.7E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 164 | 217 | 0.0096 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 210 | 12.961374 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 238 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_023764742.1 | RING-H2 finger protein ATL54 [Lactuca sativa] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6PQM7 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_06276 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology