Basic Information
Locus ID:
Ftri4G24176
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 79439179 | 79442773 | - | Ftri4G24176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 73,789.40 Da | 45.61 | 77.61 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 348 | 650 | 2.30214E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 431 | 465 | 9.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 514 | 549 | 0.0026 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 341 | 652 | 8.12E-52 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 94 | 191 | 8.14E-12 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 317 | 654 | 1.5E-117 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 48 | 196 | 1.1E-17 | - |
| SMART | SM00320 | WD40_4 | 426 | 465 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 597 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 507 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 549 | 9.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 423 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 373 | 0.86 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 652 | 19.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 518 | 558 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 518 | 551 | 10.126507 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 187 | 10.082502 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 433 | 474 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 433 | 469 | 11.708317 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 536 | 550 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 452 | 466 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 536 | 550 | 3.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 452 | 466 | 3.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 410 | 424 | 3.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 285 | - | - |
| Coils | Coil | Coil | 62 | 82 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_021989121.1 | protein SPA1-RELATED 4 isoform X1 [Helianthus annuus] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6PKX0 | Protein kinase domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_05430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology