Basic Information
Locus ID:
Ftri4G21539
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7495347 | 7499294 | - | Ftri4G21539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 37,178.71 Da | 41.01 | 65.09 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 64 | 102 | 9.65167E-14 | - |
| CDD | cd03829 | Sina | 180 | 308 | 8.30569E-69 | - |
| Pfam | PF03145 | Seven in absentia protein family | 108 | 307 | 2.8E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 119 | 310 | 1.83E-49 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 108 | 1.38E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 118 | 1.8E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 171 | 307 | 4.6E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 170 | 3.1E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 66 | 102 | 9.479666 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 119 | 179 | 14.159914 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 36 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_022000158.1 | E3 ubiquitin-protein ligase SINAT5 [Helianthus annuus] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SSR8 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0392631 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology