Basic Information
Locus ID:
Ftri4G19903
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 56519270 | 56528414 | - | Ftri4G19903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 194,521.97 Da | 47.34 | 87.25 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1389 | 1798 | 3.48758E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1436 | 1803 | 1.6E-80 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1381 | 1796 | 3.92E-93 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 185 | 640 | 7.56E-37 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1328 | 1567 | 3.0E-42 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 173 | 478 | 6.3E-44 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 522 | 646 | 1.7E-5 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1674 | 1801 | 2.3E-32 | - |
| SMART | SM00185 | arm_5 | 284 | 324 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 327 | 365 | 8.7 | IPR000225 |
| SMART | SM00119 | hect_3 | 1400 | 1803 | 6.4E-82 | IPR000569 |
| SMART | SM00185 | arm_5 | 216 | 257 | 44.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1506 | 1803 | 55.901329 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 926 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1205 | 1233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 926 | 1144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1065 | 1085 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1064 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021988971.1 | E3 ubiquitin-protein ligase UPL3 isoform X1 [Helianthus annuus] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6PQW5 | HECT-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_06501 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology